Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6671424 chr1:1160665 G/A 3.15E-10 483 31.13 30.98 13.73 KM Plot
PRAD rs6671667 chr1:6722852 A/G 0.000133 492 29.6 31.27 30.73 KM Plot
PRAD rs6677515 chr1:202771665 C/T 5.37E-6 491 30.93 30.77 37.17 KM Plot
PRAD rs66890351 chr5:178982076 A/G 2.98E-11 486 30.8 35.8 15.87 KM Plot
PRAD rs6689037 chr1:31809655 A/G 9.29E-6 490 22.87 31.27 30.87 KM Plot
PRAD rs6694487 chr1:1124819 C/T 1.43E-5 484 31.3 29.1 24.75 KM Plot
PRAD rs66965803 chr5:179033857 T/A 0.00015 484 30.73 34.37 32.9 KM Plot
PRAD rs6697297 chr1:202782991 C/G 6.7E-6 489 30.97 31.7 37.17 KM Plot
PRAD rs66978502 chr13:24003792 G/T 3.96E-8 489 31 30.18 23.67 KM Plot
PRAD rs6698073 chr1:6717672 C/T 5.77E-5 492 29.23 31.87 29.7 KM Plot
PRAD rs6698254 chr1:242002481 A/C 7.77E-5 490 30.5 31.4 29.13 KM Plot
PRAD rs66984985 chr13:45230868 G/A 1.31E-14 475 32.9 25.65 14.2 KM Plot
PRAD rs6699000 chr1:202779160 T/C 7.26E-6 485 30.8 32.63 37.17 KM Plot
PRAD rs67102443 chr2:239084602 A/G 5.38E-5 486 32.45 28.72 28.12 KM Plot
PRAD rs67115810 chr17:62984435 T/G 1.22E-8 481 30.8 31.62 19.63 KM Plot